| Thursday 5th November 1998 | |||
| Second Round 2nd Leg | |||
| Apollon Limassol | 0-1 | Panionios | (2-4) |
| Besiktas | 3-3 | Valerenga | (3-4) |
| FC Copenhagen | 0-1 | Chelsea | (1-2) |
| Maccabi Haifa | 4-1 | Ried | (5-3) |
| Mallorca | 0-0 | Genk | (1-1) |
| (Mallorca won on away goals) | |||
| Partizan Belgrade | 2-3 | Lazio | (2-3) |
| Sporting Braga | 1-0 | Lokomotiv Moscow | (2-3) |
| Varteks Varazdin | 4-2 | Heerenveen | aet (5-4) |
» European Cup Winners Cup 1998-1999 : Results
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